% This is an example for the initialization of the local alignment kernel on
% DNA sequences, where each column of the matrices of type char corresponds to
% one training/test example.

% Local Alignment String
%print LocalAlignmentString
%set_kernel LOACALALIGNMENT CHAR 10

%set_features TRAIN ../data/fm_train_dna.dat DNA
%km_train.txt = get_kernel_matrix TRAIN

%set_features TEST ../data/fm_test_dna.dat DNA
%km_test.txt = get_kernel_matrix TEST
