get_perm_c.c File Reference

Matrix permutation operations. More...

`#include "slu_ddefs.h"`
`#include "colamd.h"`
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## Functions

int | genmmd_ (int *, int *, int *, int *, int *, int *, int *, int *, int *, int *, int *, int *)
void | get_colamd (const int m, const int n, const int nnz, int *colptr, int *rowind, int *perm_c)
void | getata (const int m, const int n, const int nz, int *colptr, int *rowind, int *atanz, int **ata_colptr, int **ata_rowind)
void | at_plus_a (const int n, const int nz, int *colptr, int *rowind, int *bnz, int **b_colptr, int **b_rowind)
void | get_perm_c (int ispec, SuperMatrix *A, int *perm_c)

## Detailed Description

Copyright (c) 2003, The Regents of the University of California, through Lawrence Berkeley National Laboratory (subject to receipt of any required approvals from U.S. Dept. of Energy)

All rights reserved.

The source code is distributed under BSD license, see the file License.txt at the top-level directory.

    – SuperLU routine (version 3.1) –
    Univ. of California Berkeley, Xerox Palo Alto Research Center,
    and Lawrence Berkeley National Lab.
    August 1, 2008

## Function Documentation

void at_plus_a | ( | const int | n,
|  | const int | nz,
|  | int * | colptr,
|  | int * | rowind,
|  | int * | bnz,
|  | int ** | b_colptr,
|  | int ** | b_rowind
| ) |  |

#

    Purpose

    Form the structure of A'+A. A is an n-by-n matrix in column oriented
    format represented by (colptr, rowind). The output A'+A is in column
    oriented format (symmetrically, also row oriented), represented by
    (b_colptr, b_rowind).

int genmmd_ | ( | int * | ,
|  | int * | ,
|  | int * | ,
|  | int * | ,
|  | int * | ,
|  | int * | ,
|  | int * | ,
|  | int * | ,
|  | int * | ,
|  | int * | ,
|  | int * | ,
|  | int * |
| ) |  |

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void get_colamd | ( | const int | m,
|  | const int | n,
|  | const int | nnz,
|  | int * | colptr,
|  | int * | rowind,
|  | int * | perm_c
| ) |  |

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void get_perm_c | ( | int | ispec,
|  | SuperMatrix * | A,
|  | int * | perm_c
| ) |  |

#

    Purpose

    GET_PERM_C obtains a permutation matrix Pc, by applying the multiple
    minimum degree ordering code by Joseph Liu to matrix A'*A or A+A'.
    or using approximate minimum degree column ordering by Davis et. al.
    The LU factorization of A*Pc tends to have less fill than the LU
    factorization of A.

#

    Arguments

    ispec   (input) int
            Specifies the type of column ordering to reduce fill:
            = 1: minimum degree on the structure of A^T * A
            = 2: minimum degree on the structure of A^T + A
            = 3: approximate minimum degree for unsymmetric matrices
            If ispec == 0, the natural ordering (i.e., Pc = I) is returned.

    A       (input) SuperMatrix*
            Matrix A in A*X=B, of dimension (A->nrow, A->ncol). The number
            of the linear equations is A->nrow. Currently, the type of A
            can be: Stype = NC; Dtype = _D; Mtype = GE. In the future,
            more general A can be handled.

    perm_c  (output) int*
            Column permutation vector of size A->ncol, which defines the
            permutation matrix Pc; perm_c[i] = j means column i of A is
            in position j in A*Pc.

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void getata | ( | const int | m,
|  | const int | n,
|  | const int | nz,
|  | int * | colptr,
|  | int * | rowind,
|  | int * | atanz,
|  | int ** | ata_colptr,
|  | int ** | ata_rowind
| ) |  |

#

    Purpose

    Form the structure of A'*A. A is an m-by-n matrix in column oriented
    format represented by (colptr, rowind). The output A'*A is in column
    oriented format (symmetrically, also row oriented), represented by
    (ata_colptr, ata_rowind).

    This routine is modified from GETATA routine by Tim Davis.
    The complexity of this algorithm is: SUM_{i=1,m} r(i)^2,
    i.e., the sum of the square of the row counts.

#

    Questions

        o  Do I need to withhold the dense rows?
        o  How do I know the number of nonzeros in A'*A?